| Yarra Bend (Asylum 1848-1905; Hospital for the Insane 1905-1925) | 1848 - 1854 | VA2839 | Superior agency | |
| Mount Royal Hospital (previously known as Immigrants' Aid Society 1853-1870; Immigrants’ Aid Society’s Home for Houseless and Destitute Persons 1870-1902; Victorian Homes for the Aged and Infirm 1902-1925; Victorian ... | 1853 - 1890 | VA1280 | Superior agency | |
| Kilmore District Health (previously known as Kilmore Hospital 1860–1988; Kilmore and District Hospital 1988-2020) | 1854 - 1890 | VA1696 | Is part of agency | |
| Kilmore District Health (previously known as Kilmore Hospital 1860–1988; Kilmore and District Hospital 1988-2020) | 1854 - 1890 | VA1696 | Subordinate agency | |
| Kilmore District Health (previously known as Kilmore Hospital 1860–1988; Kilmore and District Hospital 1988-2020) | 1854 - 1890 | VA1696 | Superior agency | |
| Registry of Friendly Societies | 1855 - 1978 | VA1390 | Superior agency | |
| Registrar-General's Department | 1855 - 1869 | VA2889 | Superior agency | |
| His Majesty's Gaol, Pentridge (known as Pentridge Prison) | 1855 - 1871 | VA863 | Superior agency | |
| Gold Department (also known as Gold Fields Department) | 1855 - 1860 | VA4950 | Superior agency | |
| Guardian of Aborigines | 1855 - 1856 | VA513 | Superior agency | |
